We’re Stronger Together
With your help, we can advance education and improve student success in our community.
Assistant Professor, Basic Sciences, Microbiology Division
I work with integrative analyses of large-scale genomics data to uncover novel biology regarding our understanding on transcription and epigenetics regulation.
Key publications
Alternative promoters in CpG depleted regions pervasively account for epigenetic misregulation of cancer transcriptomes.
Nepal. C. et al, Nature Communications volume 14, Article number: 2712 (2023)
https://www.nature.com/articles/s41467-023-38272-4
Integrative molecular characterization of gallbladder cancer presents microenvironment-associated subtypes related to survival.
Nepal. C. et al, Journal of Hepatology, 2020 Dec 1
https://www.sciencedirect.com/science/article/pii/S0168827820338204?via%3Dihub
Editorial: https://www.journal-of-hepatology.eu/article/S0168-8278(21)00007-6/fulltext
Genomic Perturbations Reveal Distinct Regulatory Networks in Intrahepatic Cholangiocarcinoma.
Nepal. C. et al, Hepatology, 2018 Sep
https://aasldpubs.onlinelibrary.wiley.com/doi/10.1002/hep.29764
Editorial: https://aasldpubs.onlinelibrary.wiley.com/doi/10.1002/hep.29830
Cover article: https://aasldpubs.onlinelibrary.wiley.com/toc/15273350/2018/68/3
Ancestrally duplicated conserved noncoding element suggests dual regulatory roles of HOTAIR in cis and trans. Nepal. C. et al, iScience, Volume 23, 2020
https://www.sciencedirect.com/science/article/pii/S2589004220301929
Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing.
Nepal. C. et al, Nature Communications, 2020
https://www.nature.com/articles/s41467-019-13687-0
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements. Baranasic D et al, Nature Genetics. 2022
https://www.nature.com/articles/s41588-022-01089-w
Two independent transcription initiation codes overlap on vertebrate core promoter.
Haberle V et al Nature, 507, 381-385(2014)
https://www.nature.com/articles/nature12974
With your help, we can advance education and improve student success in our community.