Publications

Scholarly Journals--Published

  • Saied Mirshahidi, Isabella J. Yuan, Zhong Chen, Alfred Simental, Steve C. Lee, Pedro A. Andrade Filho, Thomas Murry, Feng Zeng, Penelope Duerksen-Hughes, Charles Wang, and Xiangpeng Yuan. Tumor Cell Stemness and Stromal Cell Features Contribute to Oral Cancer Outcome Disparity in Black Americans. Cancers 2024, 16:2730. Shuo Wang, Jingjing Wu, Zhong Chen, Wei Wu, Liping Lu, Yuzhou Cheng, Shuqi Li, Liangjing Chen, Xiaohua Tan, Lei Yang, Charles Wang, Yang Song. DNA methylation reprogramming mediates transgenerational diabetogenic effect induced by early-life p,p'-DDE exposure. Chemosphere 2024, 349:140907. Evelyn S Sanchez-Hernandez, Pedro T Ochoa, …. Zhong Chen, Carlos A Casiano. Title: Glucocorticoid Receptor Regulates and Interacts with LEDGF/p75 to Promote Docetaxel Resistance in Prostate Cancer Cells. Cells 2023, 12:2046. Oyefeso F, Goldberg G, Opoku N, Vazquez M, Bertucci A, Chen Z, Wang C, Muotri A, Pecaut M. Effects of acute low-moderate dose ionizing radiation to human brain organoids. PLoS One. May 31, 2023. Liu T, Chen Z (co-first author), Chen W, Evans R, Xu J, Reeves M, de Vera M and Wang C. Dysregulated miRNAs modulate tumor microenvironment associated signaling networks in pancreatic ductal adenocarcinoma. Preci Clin Med. 2023, 6:1-10. Talsania K, Shen T,…Chen Z,…Wang C, Xiao W, and Zhao Y. Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies. Genome Biology. 2022,23:255. Xiao C, Chen Z, Chen W, Padilla C, Fang LT, Liu T, Schneider V, Wang C, and Xiao W. Personalized genome assembly for accurate cancer somatic mutation discovery using tumor-normal paired reference samples. Genome Biology. 2022, 23:237. Yang Z, Chen Z (co-first author), Lin X, Yao S, Xian M, Ning X, Fu W, Jiang M, Li N, Xiao X, Feng M, Lian Z, Yang W, Ren X, Zheng Z, Zhao J, Wei N, Lu W, Roponen M, Schaub B, Wong G, Su Z, Wang C, and Li J. Rural environment reduces allergic inflammation by modulating the gut microbiota. Gut Microbes. 2022.14(1): e2125733. Chen Z, Chen W, Li Y, Moos M Jr, Xiao D, Wang C. Single-nucleus chromatin accessibility and RNA sequencing reveal impaired brain development in prenatally e-cigarette exposed neonatal rats. iScience. 2022, 25(8):104686. Chen Z, Wang C, Blood A, Bragg S, Mata-Greenwood E. Renal functional, transcriptome, and methylome adaptations in pregnant Sprague Dawley and Brown Norway rats. PLoS One. 2022;17(6): e0269792. Liu T, Chen Z (co-first author), Chen W, Chen X, Hosseini M, Yang Z, Li J, Ho D, Turay D, Gheorghe CP, Jones W, Wang C. A benchmarking study of SARS-CoV-2 whole-genome sequencing protocols using COVID-19 patient samples. iScience. 2021 Aug 20;24(8):102892. Chen Z, Stanbouly S, Nishiyama NC, Chen X, Delp MD, Qiu H, Mao XW, Wang C. Spaceflight decelerates the epigenetic clock orchestrated with a global alteration in DNA methylome and transcriptome in the mouse retina. Precis Clin Med. 2021,4(2):93-108. Xiao W, Ren L, Chen Z,….Wang C, Shi L. Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing. Nat Biotechnol. 2021, 39(9):1141-1150. Fang LT, Zhu B,…. Chen Z, ….Wang C, Xiao W. Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing. Nat Biotechnol. 2021, 39(9):1151-1160. Foox J, Nordlund J, …Wang C, Chen Z,…, Mason CE. The SEQC2 epigenomics quality control (EpiQC) study. Genome Biol. 2021, 6;22(1):332. Zhao Y, Fang LT, ….Chen Z…, Xiao W. Whole genome and exome sequencing reference datasets from a multi-center and cross-platform benchmark study. Sci Data. 2021, 9;8(1):296. Gatto NM, Garcia-Cano J, Irani C, Jaceldo-Siegl K, Liu T, Chen Z, Paul J, Fraser G, Wang C, Lee GJ. Vegetarian Dietary Patterns and Cognitive Function among Older Adults: The Adventist Health Study-2. J Nutr Gerontol Geriatr. 2021, 40(4):197-214. Gatto NM, Chen Z, Qiu H, Lee G, Duerksen-Hughes P, Fraser G, Wang C. Vegetarian diets, circulating miRNA expression and health span in subjects living in the Blue Zone. Precis Clin Med. 2020;3(4):245-259. Paul JL, Dashtipour K, Chen Z, Wang C. DNA methylome study of human cerebellar tissues identified genes and pathways possibly involved in essential tremor. Precis Clin Med. 2019, 2(4):221-234. Chen Z, Gallie DR. Ethylene Regulates Energy-Dependent Non-Photochemical Quenching in Arabidopsis through Repression of the Xanthophyll Cycle. PLoS One. 2015;10(12):e0144209. Chen Z, Jolley B, Caldwell C, Gallie DR. Eukaryotic translation initiation factor eIFiso4G is required to regulate violaxanthin De-epoxidase expression in Arabidopsis. J Biol Chem. 2014, 16;289(20):13926-36. Botanga CJ, Bethke G, Chen Z, Gallie DR, Fiehn O, Glazebrook J. Metabolite profiling of Arabidopsis inoculated with Alternaria brassicicola reveals that ascorbate reduces disease severity. Mol Plant Microbe Interact. 2012, 25(12):1628-38. Chen Z, Gallie DR. Violaxanthin de-epoxidase is rate-limiting for non-photochemical quenching under subsaturating light or during chilling in Arabidopsis. Plant Physiol Biochem. 2012, 58:66-82. Chen Z, Gallie DR. Induction of monozygotic twinning by ascorbic acid in tobacco. PLoS One. 2012;7(6):e39147. Chen Z, Gallie DR. Dehydroascorbate reductase affects non-photochemical quenching and photosynthetic performance. J Biol Chem. 2008, 283(31):21347-61. Chen Z, Gallie DR. Dehydroascorbate reductase affects leaf growth, development, and function. Plant Physiol. 2006,142(2):775-87. Chen Z, Gallie DR. Increasing tolerance to ozone by elevating foliar ascorbic acid confers greater protection against ozone than increasing avoidance. Plant Physiol. 2005, 38(3):1673-89. Chen Z, Gallie DR. The ascorbic acid redox state controls guard cell signaling and stomatal movement. Plant Cell. 2004 May;16(5):1143-62. Chen Z, Ling J, Gallie DR. RNase activity requires formation of disulfide bonds and is regulated by the redox state. Plant Mol Biol. 2004 May;55(1):83-96. doi: 10.1007/s11103-004-0438-1. Chen Z, Young TE, Ling J, Chang SC, Gallie DR. Increasing vitamin C content of plants through enhanced ascorbate recycling. Proc Natl Acad Sci. 2003 Mar 18;100(6):3525-30. (09/2024) (link)